A data integration pipeline towards reliable monitoring of phytoplankton and early detection of harmful algal blooms (Papers Track)

Bruna Guterres (Universidade Federal do Rio Grande - FURG); Sara khalid (University of Oxford); Marcelo Pias (Federal University of Rio Grande); Silvia Botelho (Federal University of Rio Grande)

Paper PDF Slides PDF Recorded Talk NeurIPS 2021 Poster Cite
Disaster Management and Relief Ecosystems & Biodiversity


Climate change is making oceans warmer and more acidic. Under these conditions phytoplankton can produce harmful algal blooms which cause rapid oxygen depletion and consequent death of marine plants and animals. Some species are even capable of releasing toxic substances endangering water quality and human health. Monitoring of phytoplankton and early detection of harmful algal blooms is essential for protection of marine flaura and fauna. Recent technological advances have enabled in-situ plankton image capture in real-time at low cost. However, available phytoplankton image databases have several limitations that prevent the practical usage of artificial intelligent models. We present a pipeline for integration of heterogeneous phytoplankton image datasets from around the world into a unified database that can ultimately serve as a benchmark dataset for phytoplankton research and therefore act as an important tool in building versatile machine learning models for climate adaptation planning. A machine learning model for early detection of harmful algal blooms is part of ongoing work.

Recorded Talk (direct link)